RACS_id	Recurrent.Gain.Loss	X.log10.pValue.	chr	start	stop	KnownDrivers	nGenes	FragileSiteName	FragileSiteCommon	FragileSiteRare	toplvl	GenesInSegment	Genetic_Coordinates	KnownDrivers_Extended	locus
cnaBLCA1	gain	1.471397	18	329586	14642350		64	NA	0	0	1	ADCYAP1,AFG3L2,ANKRD12,ANKRD62,AP005482.1,APCDD1,ARHGAP28,C18orf42,C18orf56,C18orf64,CEP192,CEP76,CETN1,CHMP1B,CIDEA,CLUL1,COLEC12,DLGAP1,EMILIN2,ENOSF1,EPB41L3,FAM210A,GNAL,IMPA2,L3MBTL4,LAMA1,LDLRAD4,LPIN2,LRRC30,MC2R,MC5R,METTL4,MPPE1,MYL12A,MYL12B,MYOM1,NAPG,NDC80,NDUFV2,PIEZO2,POTEC,PPP4R1,PSMG2,PTPN2,PTPRM,RAB12,RAB31,RALBP1,RNMT,SEH1L,SLMO1,SMCHD1,SOGA2,SPIRE1,TGIF1,TMEM200C,TUBB6,TWSG1,TXNDC2,TYMS,VAPA,YES1,ZBTB14,ZNF519	chr18:329586-14642350		18p11.32
cnaBLCA2	gain	3.366228	18	18689747	21187586		16	NA	0	0	1	ABHD3,ANKRD29,C18orf8,CABLES1,CTAGE1,ESCO1,GATA6,GREB1L,MIB1,NPC1,RBBP8,RIOK3,ROCK1,RP11-595B24.2,SNRPD1,TMEM241	chr18:18689747-21187586		18q11.1
cnaBLCA3	gain	2.713218	10	415240	18982605	GATA3	91	NA	0	0	0	ACBD7,ADARB2,AKR1C1,AKR1C2,AKR1C3,AKR1C4,AKR1CL1,AKR1E2,ANKRD16,ARL5B,ASB13,ATP5C1,BEND7,C10orf111,C1QL3,CACNB2,CALML3,CALML5,CAMK1D,CCDC3,CDC123,CDNF,CELF2,CUBN,DCLRE1C,DHTKD1,DIP2C,ECHDC3,FAM107B,FAM171A1,FAM188A,FAM208B,FBXO18,FRMD4A,GATA3,GDI2,GTPBP4,HSPA14,IDI1,IDI2,IL15RA,IL2RA,ITGA8,ITIH2,ITIH5,KIN,KLF6,LARP4B,MCM10,MEIG1,MRC1,MRC1L1,NET1,NMT2,NSUN6,NUDT5,OLAH,OPTN,PFKFB3,PFKP,PHYH,PITRM1,PRKCQ,PROSER2,PRPF18,PRR26,PTER,PTPLA,RBM17,RP11-139J15.7,RP11-295P9.3,RPP38,RSU1,SEC61A2,SEPHS1,SFMBT2,SLC39A12,ST8SIA6,STAM,SUV39H2,TAF3,TMEM236,TMEM236,TRDMT1,TUBAL3,UCMA,UCN3,UPF2,USP6NL,VIM,WDR37	chr10:415240-18982605	GATA3,KLF6,LARP4B,VIM	10p15.3
cnaBLCA4	gain	10.077803	4	1639078	2570096	FGFR3	16	NA	0	0	1	C4orf48,FAM53A,FGFR3,HAUS3,LETM1,MXD4,NAT8L,NELFA,POLN,RNF4,RP11-503N18.3,SLBP,TACC3,TMEM129,WHSC1,ZFYVE28	chr4:1639078-2570096	FGFR3,WHSC1	4p16.3
cnaBLCA5	loss	4.796471	4	162449354	188763651		85	NA	0	0	0	AADAT,ACSL1,ADAM29,AGA,ANKRD37,ANXA10,ASB5,C4orf27,C4orf47,CASP3,CBR4,CCDC110,CDKN2AIP,CENPU,CEP44,CLCN3,CLDN22,CLDN24,CPE,CYP4V2,DCTD,DDX60,DDX60L,ENPP6,F11,FAM149A,FAM218A,FAT1,FBXO8,FSTL5,GALNT7,GALNTL6,GLRA3,GPM6A,HAND2,HELT,HMGB2,HPGD,ING2,IRF2,KIAA1430,KLHL2,KLKB1,LINC01098,LRP2BP,MARCH1,MFAP3L,MSMO1,MTNR1A,NAF1,NEIL3,NEK1,NPY1R,NPY5R,PALLD,PDLIM3,PRIMPOL,RP11-215A19.2,RP11-279O9.4,RP11-487E13.1,RP11-701P16.2,RWDD4,SAP30,SCRG1,SH3RF1,SLC25A4,SNX25,SORBS2,SPATA4,SPCS3,SPOCK3,STOX2,TENM3,TKTL2,TLL1,TLR3,TMA16,TMEM192,TRAPPC11,TRIM60,TRIM61,UFSP2,VEGFC,WDR17,WWC2	chr4:162449354-188763651	FAT1,IRF2	4q32.2
cnaBLCA6	loss	1.478171	11	5512778	5514334		2	NA	0	0	1	HBE1,HBG2	chr11:5512778-5514334		11p15.4
cnaBLCA7	gain	2.135541	3	11719919	12854350		10	NA	0	0	0	C3orf83,CAND2,MKRN2,PPARG,RAF1,TAMM41,TIMP4,TMEM40,TSEN2,VGLL4	chr3:11719919-12854350		3p25.3
cnaBLCA8	gain	1.554805	3	12935841	13169504		1	NA	0	0	1	IQSEC1	chr3:12935841-13169504		3p25.2
cnaBLCA9	gain	1.643862	6	18963569	23689732		7	NA	0	0	1	CDKAL1,E2F3,HDGFL1,ID4,MBOAT1,PRL,SOX4	chr6:18963569-23689732		6p22.3
cnaBLCA10	loss	2.842838	19	21714129	21721990		1	NA	0	0	1	ZNF429	chr19:21714129-21721990		19p12
cnaBLCA11	loss	7.149997	2	28200551	28205277		2	NA	0	0	1	BRE,MRPL33	chr2:28200551-28205277		2p23.2
cnaBLCA12	gain	4.329562	1	39481208	43066202		42	NA	0	0	1	BMP8A,BMP8B,CAP1,CCDC30,CITED4,COL9A2,CTPS1,EDN2,EXO5,FOXJ3,FOXO6,GUCA2A,GUCA2B,HEYL,HIVEP3,HPCAL4,KCNQ4,KIAA0754,MACF1,MFSD2A,MYCL,NDUFS5,NFYC,NT5C1A,OXCT2,PABPC4,PPCS,PPIE,PPT1,RIMKLA,RIMS3,RLF,SCMH1,SLFNL1,SMAP2,TMCO2,TRIT1,ZFP69,ZFP69B,ZMPSTE24,ZMYND12,ZNF684	chr1:39481208-43066202	MACF1	1p34.3
cnaBLCA13	gain	1.928417	1	159770218	162931419	SDHC	77	NA	0	0	1	ADAMTS4,APOA2,ARHGAP30,ATF6,ATP1A2,ATP1A4,B4GALT3,C1orf110,C1orf111,C1orf192,C1orf204,C1orf226,CASQ1,CCDC19,CD244,CD48,CD84,COPA,DCAF8,DCAF8,DDR2,DEDD,DUSP12,F11R,FCER1G,FCGR2A,FCGR2B,FCGR3A,FCGR3B,FCRL6,FCRLA,FCRLB,HSD17B7,HSPA6,IGSF8,IGSF9,ITLN1,ITLN2,KCNJ10,KCNJ9,KLHDC9,LY9,MPZ,NCSTN,NDUFS2,NHLH1,NIT1,NOS1AP,NR1I3,OLFML2B,PCP4L1,PEA15,PEX19,PFDN2,PIGM,PPOX,PVRL4,RP11-190A12.7,RP11-544M22.13,RP11-565P22.6,SDHC,SH2D1B,SLAMF1,SLAMF6,SLAMF7,SLAMF8,SLAMF9,TAGLN2,TOMM40L,TSTD1,UAP1,UFC1,UHMK1,USF1,USP21,VANGL2,VSIG8	chr1:159770218-162931419	SDHC	1q23.2
cnaBLCA14	loss	8.630411	1	28269376	28271877		1	NA	0	0	1	SMPDL3B	chr1:28269376-28271877		1p35.3
cnaBLCA15	gain	2.404895	20	29843973	33529873	ASXL1	63	NA	0	0	1	ACSS2,ACTL10,AHCY,ASIP,ASXL1,BCL2L1,BPIFA1,BPIFA2,BPIFA3,BPIFB1,BPIFB2,BPIFB3,BPIFB4,BPIFB6,C20orf112,C20orf144,CBFA2T2,CCM2L,CDK5RAP1,CHMP4B,COMMD7,COX4I2,DEFB115,DEFB116,DEFB118,DEFB119,DEFB121,DEFB123,DEFB124,DNMT3B,DUSP15,DYNLRB1,E2F1,EFCAB8,EIF2S2,FOXS1,GGT7,GSS,HCK,HM13,ID1,ITCH,KIF3B,MAP1LC3A,MAPRE1,MYLK2,NCOA6,NECAB3,PDRG1,PIGU,PLAGL2,POFUT1,PXMP4,RALY,REM1,RP11-410N8.4,SNTA1,SUN5,TM9SF4,TP53INP2,TPX2,XKR7,ZNF341	chr20:29843973-33529873	ASXL1	20q11.21
cnaBLCA16	gain	1.3128	17	37809357	37990695	ERBB2	8	NA	0	0	1	ERBB2,GRB7,IKZF3,MIEN1,PGAP3,PNMT,STARD3,TCAP	chr17:37809357-37990695	ERBB2	17q12
cnaBLCA17	loss	7.395128	15	42181842	42185917		1	NA	0	0	1	SPTBN5	chr15:42181842-42185917		15q15.1
cnaBLCA18	loss	2.228578	16	48488696	61699095	CYLD	89	NA	0	0	1	ADCY7,AKTIP,AMFR,ARL2BP,BBS2,BRD7,C16orf78,C16orf80,C16orf97,CAPNS2,CBLN1,CCDC102A,CCDC113,CCDC135,CCL17,CCL22,CDH8,CES1,CES5A,CETP,CHD9,CIAPIN1,CNEP1R1,CNGB1,CNOT1,COQ9,CPNE2,CSNK2A2,CTD-2600O9.1,CX3CL1,CYLD,DOK4,FAM192A,FTO,GINS3,GNAO1,GOT2,GPR114,GPR56,GPR97,HEATR3,HERPUD1,IRX3,IRX5,IRX6,KATNB1,KIFC3,LPCAT2,MMP15,MMP2,MT1A,MT1B,MT1E,MT1F,MT1G,MT1H,MT1M,MT1X,MT2A,MT3,MT4,N4BP1,NDRG4,NKD1,NLRC5,NOD2,NUDT21,NUP93,OGFOD1,PAPD5,PLLP,POLR2C,PRSS54,RBL2,RP11-105C20.2,RP11-324D17.1,RPGRIP1L,RSPRY1,SALL1,SETD6,SLC12A3,SLC38A7,SLC6A2,SNX20,TEPP,TOX3,USB1,ZNF319,ZNF423	chr16:48488696-61699095	CHD9,CNOT1,CYLD,MMP2,NUP93	16q12.1
cnaBLCA19	gain	1.466565	13	98035843	114987458	ERCC5	70	NA	0	0	0	ABHD13,ADPRHL1,ANKRD10,ARGLU1,ARHGEF7,ATP11A,ATP4B,BIVM,BIVM-ERCC5,C13orf35,CARKD,CARS2,CLYBL,COL4A1,COL4A2,CUL4A,DAOA,DCUN1D2,DOCK9,EFNB2,ERCC5,F10,F7,FAM155A,FARP1,FGF14,GAS6,GGACT,GPR18,GPR183,GRK1,GRTP1,ING1,IPO5,IRS2,ITGBL1,KDELC1,LAMP1,LIG4,MBNL2,MCF2L,METTL21C,MYO16,NALCN,PCCA,PCID2,PROZ,RAB20,RAP2A,RASA3,RNF113B,RP11-65D24.2,SLC10A2,SLC15A1,SOX1,SPACA7,STK24,TEX29,TEX30,TFDP1,TM9SF2,TMCO3,TMEM255B,TMTC4,TNFSF13B,TPP2,TUBGCP3,UBAC2,ZIC2,ZIC5	chr13:98035843-114987458	ERCC5,ING1,IRS2,TFDP1	13q32.1
cnaBLCA20	loss	2.64617	13	49061914	49164633		1	NA	0	0	1	RCBTB2	chr13:49061914-49164633		13q14.2
cnaBLCA21	gain	4.714371	7	52222326	57248364	EGFR	18	NA	0	0	1	CCT6A,CHCHD2,EGFR,GBAS,LANCL2,MRPS17,MRPS17,NUPR1L,PHKG1,POM121L12,PSPH,SEC61G,SEPT14,SUMF2,VOPP1,VSTM2A,ZNF479,ZNF713	chr7:52222326-57248364	EGFR	7p12.1
cnaBLCA22	gain	1.347245	8	101062747	102681549		11	NA	0	0	1	ANKRD46,FBXO43,GRHL2,PABPC1,POLR2K,RGS22,RNF19A,SNX31,SPAG1,YWHAZ,ZNF706	chr8:101062747-102681549	PABPC1	8q22.2
cnaBLCA23	gain	1.403298	8	127702544	129115965	MYC	2	NA	0	0	1	MYC,POU5F1B	chr8:127702544-129115965	MYC	8q24.21
cnaBLCA24	loss	1.331884	9	114332950	114335973		2	NA	0	0	1	PTGR1,ZNF483	chr9:114332950-114335973		9q31.3